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Molecular characterization of cold responsive protein AnF48_RPL11 from polar ice green alga AnF48

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Title
Molecular characterization of cold responsive protein AnF48_RPL11 from polar ice green alga AnF48
Other Titles
남극 미세조류 AnF48에서 분리해낸 저온적응 유전자 AnF48_RPL11의 분리 연구
Authors
Kim, Min-Jung
Lee, Soo Young
Kang, Sung-Ho
Choi, Han-Gu
Kim, Sanghee
Jung, Min Gui
Keywords
Polar ice green alga; cold responsive protein; ribosomal protein
Issue Date
2011
Citation
Kim, Min-Jung, et al. 2011. Molecular characterization of cold responsive protein AnF48_RPL11 from polar ice green alga AnF48. kopri. kopri. 2011.12.06~.
Abstract
A polar micro green alga, AnF48 was collected from near the King Sejong Station located in King George Island in the Antarctica (62° 13′S 58° 47′W). AnF48 successfully proliferated and propagated near 4-10℃, in contrast it showed dramatic growth decrease (up to 50%) when the ambient temperature exceeded 15℃. To discover the genes which are responsible for this specific temperature adaptation, GeneFishing DEG PCR was performed using cDNAs extracted from AnF48 grown at different temperatures (4℃, 15℃, 25℃). Genes induced by low temperature were identified by cloning and sequencing. One of them was a homolog of RPL11 which has been reported as a cold-responsive gene in E. coli. Thus, we named it AnF48_RPL11 (ribosomal protein L11). RT-PCR analysis confirmed that the expression level of AnF48_RPL11 was significantly up-regulated under 4℃ compared with that at 15℃ or 25℃. The full length cDNA sequences of AnF48_RPL11 was obtained using 5 and 3 race. The open reading frame consisted of 540 bp encoding 180 amino acids. It contains four exons and three introns meanwhile Chlamydomonas reinhardtii has seven exons and six introns. To our surprise, the similarity of deduced amino acids of AnF48_RPL11 is higher with RPL11 in Arabidopsis thaliana (92%) than in algal homologues Chlamydomonas reinhardtii (88%). This results suggested cold adaptative mechanism is conserved in a wide ran
URI
http://repository.kopri.re.kr/handle/201206/8465
Conference Name
kopri
Conference Place
kopri
Conference Date
2011.12.06~
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