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Unveiling the genomic aspects of Hahella chejuensis KCTC2396, an algicidal marine bacterium

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Title
Unveiling the genomic aspects of Hahella chejuensis KCTC2396, an algicidal marine bacterium
Other Titles
해양미생물 Hahella chejuensis의 유전체 분석
Authors
Choi, Sanghaeng
PARK, HONG SEOG
Lee, Yongseok
Jeong, H.
Park, Yeon-Kyung
Lee, Yoo Kyung
Kang, Ho-Young
Ha, Misook
Yi, Soohyun
Lee, Hyun Hee
Keywords
Hahella chejuensis; algidical activity; exopolysaccharide; genome; marine bacterium
Issue Date
2004
Citation
Choi, Sanghaeng, et al. 2004. Unveiling the genomic aspects of Hahella chejuensis KCTC2396, an algicidal marine bacterium. TIGR. TIGR. 2004.04.15~.
Abstract
Hahella chejμeηsis KCTC 2396T, previously identifìed as a sole member of a novel genus (Lee et al, 2001, IJSEM 51:661-6) in the class gammmaproetobacteria, produces copious extracellular polysaccharides having desirable properties for industrial applications and a red pigment showing the algicidal activity against Coch!odinium and other red-tide phytoplanktons. Random shotgun sequences of about 5.3-fold genomic coverage were assembled into 619 contigs (total contig length ≈ 7.3 Mb), and basic annotation was performed. Arnong the 7,376 ORFs predicted by Glimmer, 45% could be functionally assignable according to the COG categories, and 30% were unique to the genome. Genes potentially involved in synthesis of red pigments were searched throl..1ghout the genome, and several were identified in a scaffold consisting of four contigs. Subsequently, a ca. 60-kb region encompassing all of the genes responsible for 52 the pigment synthesis was completely sequenced and re-annotated. Genome analysis also revealed a multitude of genes possibly involved in biosynthesis and transport of exopolysaccharides, and about a dozen of gene clusters for biosynthesis of polyketides and non-ribosomal peptides. One of the striking features of the H. chejueneis genome is the unexpected presence of two gene sets for type III secretion, which functions in injection of effector proteins into eukalyotic cells. This suggests that H. chejueneis may occupy a unique ecological position in the marine environment through interactions with oLher organisms.
URI
http://repository.kopri.re.kr/handle/201206/8546
Conference Name
TIGR
Conference Place
TIGR
Conference Date
2004.04.15~
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