https://repository.kopri.re.kr/handle/201206/9738 2026-04-21T12:55:31Z 2026-04-21T12:55:31Z Lee, Seung Jae Im, Tae-Eul Jo, Euna Choi, Eunkyung Chi, Young Min Kim, Jin-Hyoung Kim, Jeong-Hoon Park, Hyun https://repository.kopri.re.kr/handle/201206/12061 2022-03-24T07:15:18Z 2020-07-01T00:00:00Z

Title: The complete mitochondrial genome of Macrourus whitsoni (Gadiformes, Macrouridae) Authors: Lee, Seung Jae; Im, Tae-Eul; Jo, Euna; Choi, Eunkyung; Chi, Young Min; Kim, Jin-Hyoung; Kim, Jeong-Hoon; Park, Hyun Abstract: The complete mitochondrial genome of Notothenia rossii was obtained using PacBio Sequel long-read sequencing platform. The mitogenome of N. rossii was circular form and 18,274 bp long, which consists of 13 protein-coding genes, 24 tRNAs, 2 rRNAs, and non-coding control region. Particularly, we found duplicated tRNAThr and tRNAPro in addition to the typical 22 tRNAs. The phylogenetic tree revealed that N. rossii was most closely related to N. coriiceps among species in the Nototheniidae clade within the suborder Notothenioidei.

2020-07-01T00:00:00Z Tabassum, Nazia Lee, Ji-Hyun Lee, Soo Rin Kim, Jeong-Hoon Kim, Hyun-Woo https://repository.kopri.re.kr/handle/201206/12084 2022-03-24T07:15:15Z 2020-04-01T00:00:00Z

Title: Characterization of the complete mitochondrial genome of the false trevally, Lactarius lactarius (Perciformes: Lactariidae) Authors: Tabassum, Nazia; Lee, Ji-Hyun; Lee, Soo Rin; Kim, Jeong-Hoon; Kim, Hyun-Woo Abstract: The complete mitochondrion DNA sequence of Lactarius lactarius was determined by next generation sequencing (NGS) platform as the first mitogenome report in the family. The mitogenome of L. lactarius wa 16,642 bp in length that contains 13 gene-encoded proteins, 2 ribosomal RNA gene (12S and 16S), 22 tRNA gene, and a control region (D-loop). Besides COX1 gene (GTG), all the other protein-coding genes showed typical (ATG) start codon. Incomplete stop condons (TA-/T-) were identified in COX2, COX3, ND2, ND3, ND4 and Cyt B. A phylogenetic analysis with currently reported mitogenomes of its relative species, L. lactarius formed a Lactariidae clade distinct from other families. Two species, Pentaceros japonicus (AB739063) and Banjos banjos (KT345965) were among the most closely related species with 86.61% and 86.33% sequence identity, respectively.

2020-04-01T00:00:00Z Lee, Won Young https://repository.kopri.re.kr/handle/201206/11344 2022-03-24T07:14:17Z 2020-03-01T00:00:00Z

Title: Learning from Life: Getting to Know Authors: Lee, Won Young Abstract: 생명에게 배운다 : 알아간다는 것

2020-03-01T00:00:00Z Kim, Bo-Mi Lee, Yoon Jin Kim, Jeong-Hoon Kim, Jin-Hyoung Kang, Seunghyun Jo, Euna Lee, Seung Jae Lee, Jun Hyuck Chi, Young Min Park, Hyun https://repository.kopri.re.kr/handle/201206/11008 2022-03-24T07:14:15Z 2020-02-01T00:00:00Z

Title: The Genome Assembly and Annotation of the Southern Elephant Seal Mirounga leonina Authors: Kim, Bo-Mi; Lee, Yoon Jin; Kim, Jeong-Hoon; Kim, Jin-Hyoung; Kang, Seunghyun; Jo, Euna; Lee, Seung Jae; Lee, Jun Hyuck; Chi, Young Min; Park, Hyun Abstract: The southern elephant seal Mirounga leonina is the largest phocid seal and one of the two species of elephant seals. They are listed as 'least concern' by the International Union for Conservation of Nature (IUCN) Red List of Threatened Species 2015. Here, we have assembled the reference genome for M. leonina using the 10× chromium sequencing platform. The final genome assembly of M. leonina was 2.42 Gb long, with a contig N50 length of 54 Mb and a maximum length of 111.6 Mb. The M. leonina genome contained 20,457 predicted protein-coding genes and possessed 41.51% repeated sequences. The completeness of the M. leonina genome was evaluated using benchmarking universal single-copy orthologous genes (BUSCOs): the assembly was highly complete, containing 95.6% of the core set of mammalian genes. The high-quality genomic information on M. leonina will be essential for further understanding of adaptive metabolism upon repeated breath-hold dives and the exploration of molecular mechanisms contributing to its unique biochemical and physiological characteristics. The southern elephant seal genome project was deposited at NCBI (National Center for Biotechnology Information) under BioProject number PRJNA587380.

2020-02-01T00:00:00Z