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The Genome Assembly and Annotation of the Southern Elephant Seal Mirounga leonina

Cited 2 time in wos
Cited 2 time in scopus

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dc.contributor.authorKim, Bo-Mi-
dc.contributor.authorLee, Yoon Jin-
dc.contributor.authorKim, Jeong-Hoon-
dc.contributor.authorKim, Jin-Hyoung-
dc.contributor.authorKang, Seunghyun-
dc.contributor.authorJo, Euna-
dc.contributor.authorLee, Seung Jae-
dc.contributor.authorLee, Jun Hyuck-
dc.contributor.authorChi, Young Min-
dc.contributor.authorPark, Hyun-
dc.date.accessioned2020-10-21T06:32:25Z-
dc.date.available2020-10-21T06:32:25Z-
dc.date.issued2020-02-
dc.identifier.urihttps://repository.kopri.re.kr/handle/201206/11008-
dc.description.abstractThe southern elephant seal Mirounga leonina is the largest phocid seal and one of the two species of elephant seals. They are listed as 'least concern' by the International Union for Conservation of Nature (IUCN) Red List of Threatened Species 2015. Here, we have assembled the reference genome for M. leonina using the 10× chromium sequencing platform. The final genome assembly of M. leonina was 2.42 Gb long, with a contig N50 length of 54 Mb and a maximum length of 111.6 Mb. The M. leonina genome contained 20,457 predicted protein-coding genes and possessed 41.51% repeated sequences. The completeness of the M. leonina genome was evaluated using benchmarking universal single-copy orthologous genes (BUSCOs): the assembly was highly complete, containing 95.6% of the core set of mammalian genes. The high-quality genomic information on M. leonina will be essential for further understanding of adaptive metabolism upon repeated breath-hold dives and the exploration of molecular mechanisms contributing to its unique biochemical and physiological characteristics. The southern elephant seal genome project was deposited at NCBI (National Center for Biotechnology Information) under BioProject number PRJNA587380.en_US
dc.languageEnglishen_US
dc.language.isoenen_US
dc.subjectGenetics & Heredityen_US
dc.subject.classificationKing Sejong Stationen_US
dc.titleThe Genome Assembly and Annotation of the Southern Elephant Seal Mirounga leoninaen_US
dc.title.alternative남방코끼리물범의 유전체 분석en_US
dc.typeArticleen_US
dc.identifier.bibliographicCitationKim, Bo-Mi, et al. 2020. "The Genome Assembly and Annotation of the Southern Elephant Seal Mirounga leonina". <em>GENES</em>, 11(2): 160-168.-
dc.citation.titleGENESen_US
dc.citation.volume11en_US
dc.citation.number2en_US
dc.identifier.doi10.3390/genes11020160-
dc.citation.startPage160en_US
dc.citation.endPage168en_US
dc.description.articleClassificationSCIE-
dc.description.jcrRateJCR 2018:35.057en_US
dc.subject.keyword10× genomics chromium technologyen_US
dc.subject.keywordMirounga leoninaen_US
dc.subject.keywordannotationen_US
dc.subject.keywordgenome assemblyen_US
dc.subject.keywordsouthern elephant sealen_US
dc.identifier.localId2020-0014-
dc.identifier.scopusid2-s2.0-85079083982-
dc.identifier.wosid000519271500065-
Appears in Collections  
2018-2019, Ecosystem Structure and Function of Marine Protected Area (MPA) in Antarctica (18-19) / Kim, Jeong-Hoon (PM18060)
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