Chromosomal assembly of the Antarctic toothfish (Dissostichus mawsoni) genome using third-generation DNA sequencing and Hi-C technology
DC Field | Value | Language |
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dc.contributor.author | Lee, Seung Jae | - |
dc.contributor.author | Kim, Jeong-Hoon | - |
dc.contributor.author | Jo, Euna | - |
dc.contributor.author | Choi, Eunkyung | - |
dc.contributor.author | Kim, Jinmu | - |
dc.contributor.author | Choi, Seok-Gwan | - |
dc.contributor.author | Chung, Sangdeok | - |
dc.contributor.author | Kim, Hyun-Woo | - |
dc.contributor.author | Park, Hyun | - |
dc.date.accessioned | 2021-04-29T00:27:32Z | - |
dc.date.available | 2021-04-29T00:27:32Z | - |
dc.date.issued | 2021-01 | - |
dc.identifier.uri | https://repository.kopri.re.kr/handle/201206/11772 | - |
dc.description.abstract | The Antarctic toothfish, Dissostichus mawsoni, belongs to the Nototheniidae family and is distributed in sub-zero temperatures below S60° latitude in the Southern Ocean. Therefore, it is an attractive model species to study the stenothermal cold-adapted character state. In this study, we successfully generated highly contiguous genome sequences of D. mawsoni, which contained 1 062 scaffolds with a N50 length of 36.98 Mb and longest scaffold length of 46.82 Mb. Repetitive elements accounted for 40.87% of the genome. We also inferred 32 914 protein-coding genes using in silico gene prediction and transcriptome sequencing and detected splicing variants using Isoform-Sequencing (Iso-Seq), which will be invaluable resource for further exploration of the adaptation mechanisms of Antarctic toothfish. This new high-quality reference genome of D. mawsoni provides a fundamental resource for a deeper understanding of cold adaptation and conservation of species | en_US |
dc.language | English | en_US |
dc.language.iso | en_US | en_US |
dc.subject | Zoology | en_US |
dc.subject.classification | Jang Bogo Station | en_US |
dc.title | Chromosomal assembly of the Antarctic toothfish (Dissostichus mawsoni) genome using third-generation DNA sequencing and Hi-C technology | en_US |
dc.title.alternative | 3세대 염기서열 및 Hi-C 분석기법으로 남극이빨고기의 염색체 유전자 해독 | en_US |
dc.type | Article | en_US |
dc.identifier.bibliographicCitation | Lee, Seung Jae, et al. 2021. "Chromosomal assembly of the Antarctic toothfish (Dissostichus mawsoni) genome using third-generation DNA sequencing and Hi-C technology". <em>ZOOLOGICAL RESEARCH</em>, 42(1): 124-129. | - |
dc.citation.title | ZOOLOGICAL RESEARCH | en_US |
dc.citation.volume | 42 | en_US |
dc.citation.number | 1 | en_US |
dc.identifier.doi | 10.24272/j.issn.2095-8137.2020.264 | - |
dc.citation.startPage | 124 | en_US |
dc.citation.endPage | 129 | en_US |
dc.description.articleClassification | SCIE | - |
dc.description.jcrRate | JCR 2019:7.101 | en_US |
dc.subject.keyword | Antarctic toothfish | en_US |
dc.subject.keyword | Dissostichus mawsoni | en_US |
dc.subject.keyword | Genome assembly | en_US |
dc.subject.keyword | Hi-C | en_US |
dc.subject.keyword | Pacific Biosciences | en_US |
dc.identifier.localId | 2021-0011 | - |
dc.identifier.scopusid | 2-s2.0-85100069822 | - |
dc.identifier.wosid | 000616785200013 | - |
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