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Genome-wide identification and structural analysis of heat shock protein gene families in the marine rotifer Brachionus spp.: Potential application in molecular ecotoxicology

Cited 6 time in wos
Cited 7 time in scopus

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dc.contributor.authorPark, Jun Chul-
dc.contributor.authorKim, Duck-Hyun-
dc.contributor.authorLee, Yoseop-
dc.contributor.authorLee, Min-Chul-
dc.contributor.authorKim, Tai Kyoung-
dc.contributor.authorYim, Joung Han-
dc.contributor.authorLee, Jae-Seong-
dc.date.accessioned2021-04-30T08:35:32Z-
dc.date.available2021-04-30T08:35:32Z-
dc.date.issued2020-12-
dc.identifier.urihttps://repository.kopri.re.kr/handle/201206/11796-
dc.description.abstractHeat shock proteins (Hsp) are class of conserved and ubiquitous stress proteins present in all living organisms from primitive to higher level. Various studies have demonstrated multiple cellular functions of Hsp in living organisms as an important biomarker in response to abiotic and biotic stressors including temperature, salinity, pH, hypoxia, environmental pollutants, and pathogens. However, full understanding on the mechanism and pathway involved in the induction of Hsp still remains challenging, especially in aquatic invertebrates. In this study, the entire Hsp family and subfamily members in the marine rotifers Brachionus spp., one of the cosmopolitan ecotoxicological model organisms, have been genome-widely identified. In Brachionus spp. Hsp family was comprised of Hsp10, small hsp (sHsp), Hsp40, Hsp60, Hsp70/105, and Hsp90, with highest number of genes found within Hsp40 DnaJ homolog subfamily C members. Also, the differences in the orientation of the conserved motifs within Hsp family may have induced differences in transcriptional gene modulation in response to thermal stress in Brachionus koreanus. Overall, Hsp family-specific domains were highly conserved in all three Brachionus spp., relative to Homo sapiens and across other animal taxa and these findings will be helpful for future ecotoxicological studies focusing on Hsps.en_US
dc.languageEnglishen_US
dc.language.isoen_USen_US
dc.subjectBiochemistry & Molecular Biologyen_US
dc.subjectGenetics & Heredityen_US
dc.subject.classificationJang Bogo Stationen_US
dc.titleGenome-wide identification and structural analysis of heat shock protein gene families in the marine rotifer Brachionus spp.: Potential application in molecular ecotoxicologyen_US
dc.title.alternative극지 요각류 Brachionus spp의 heat shock protein의 역활en_US
dc.typeArticleen_US
dc.identifier.bibliographicCitationPark, Jun Chul, et al. 2020. "Genome-wide identification and structural analysis of heat shock protein gene families in the marine rotifer Brachionus spp.: Potential application in molecular ecotoxicology". <em>COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS</em>, 36(1): 100749-100749.-
dc.citation.titleCOMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICSen_US
dc.citation.volume36en_US
dc.citation.number1en_US
dc.identifier.doi10.1016/j.cbd.2020.100749-
dc.citation.startPage100749en_US
dc.citation.endPage100749en_US
dc.description.articleClassificationSCI-
dc.description.jcrRateJCR 2018:51.149en_US
dc.subject.keywordStress proteinsen_US
dc.subject.keywordMolecular chaperonesen_US
dc.subject.keywordInvertebratesen_US
dc.subject.keywordRotiferen_US
dc.identifier.localId2020-0249-
dc.identifier.scopusid2-s2.0-85092526443-
dc.identifier.wosid000591917000002-
Appears in Collections  
2020-2020, Commercialization of new Biomaterials from polar organisms (20-20) / Yim, Joung Han (PE20010)
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