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Complete genome sequencing and comparative CAZyme analysis of Rhodococcus sp. PAMC28705 and PAMC28707 provide insight into their biotechnological and phytopathogenic potential

Cited 5 time in wos
Cited 5 time in scopus

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dc.contributor.authorGhimire, Nisha-
dc.contributor.authorHan, So-Ra-
dc.contributor.authorKim, Byeollee-
dc.contributor.authorJung, Sang-Hee-
dc.contributor.authorPark, Hyun-
dc.contributor.authorLee, Jun Hyuck-
dc.contributor.authorOh, Tae-Jin-
dc.date.accessioned2021-11-26T07:33:06Z-
dc.date.available2021-11-26T07:33:06Z-
dc.date.issued2021-05-
dc.identifier.urihttps://repository.kopri.re.kr/handle/201206/12969-
dc.description.abstractStudy of carbohydrate-active enzymes (CAZymes) can reveal information about the lifestyle and behavior of an organism. Rhodococcus species is well known for xenobiotic metabolism; however, their carbohydrate utilization ability has been less discussed till date. This study aimed to present the CAZyme analysis of two Rhodococcus strains, PAMC28705 and PAMC28707, isolated from lichens in Antarctica, and compare them with other Rhodococcus, Mycobacterium, and Corynebacterium strains. Genome-wide computational analysis was performed using various tools. Results showed similarities in CAZymes across all the studied genera. All three genera showed potential for significant polysaccharide utilization, including starch, cellulose, and pectin referring their biotechnological potential. Keeping in mind the pathogenic strains listed across all three genera, CAZymes associated to pathogenicity were analyzed too. Cutinase enzyme, which has been associated with phytopathogenicity, was abundant in all the studied organisms. CAZyme gene cluster of Rhodococcus sp. PAMC28705 and Rhodococcus sp. PAMC28707 showed the insertion of cutinase in the cluster, further supporting their possible phytopathogenic properties.en_US
dc.languageEnglishen_US
dc.language.isoenen_US
dc.subjectMicrobiologyen_US
dc.subject.classificationKing Sejong Stationen_US
dc.titleComplete genome sequencing and comparative CAZyme analysis of Rhodococcus sp. PAMC28705 and PAMC28707 provide insight into their biotechnological and phytopathogenic potentialen_US
dc.title.alternative남극 지의류에서 분리한 미생물 2종 (Rhodococcus sp. PAMC28705 and PAMC28707) 의 유전체 분석을 통해 유용 당분해 효소 유전자 발굴과 식물 병원균이 가지는 Cutinase 효소 발견en_US
dc.typeArticleen_US
dc.identifier.bibliographicCitationGhimire, Nisha, et al. 2021. "Complete genome sequencing and comparative CAZyme analysis of Rhodococcus sp. PAMC28705 and PAMC28707 provide insight into their biotechnological and phytopathogenic potential". <em>ARCHIVES OF MICROBIOLOGY</em>, 203(4): 1731-1742.-
dc.citation.titleARCHIVES OF MICROBIOLOGYen_US
dc.citation.volume203en_US
dc.citation.number4en_US
dc.identifier.doi10.1007/s00203-020-02177-3-
dc.citation.startPage1731en_US
dc.citation.endPage1742en_US
dc.description.articleClassificationSCIE-
dc.description.jcrRateJCR 2019:76.471en_US
dc.subject.keywordBiotechnological potentialen_US
dc.subject.keywordCAZymeen_US
dc.subject.keywordCutinaseen_US
dc.subject.keywordPhytopathogenic propertyen_US
dc.subject.keywordPolysaccharideen_US
dc.subject.keywordRhodococcusen_US
dc.identifier.localId2021-0013-
dc.identifier.scopusid2-s2.0-85100162769-
dc.identifier.wosid000608672100002-
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