A chromosome-level reference genome of the Antarctic blackfin icefish Chaenocephalus aceratus
DC Field | Value | Language |
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dc.contributor.author | Lee Seung Jae | - |
dc.contributor.author | Kim Jinmu | - |
dc.contributor.author | Choi Eun Kyung | - |
dc.contributor.author | Jo Euna | - |
dc.contributor.author | Cho Minjoo | - |
dc.contributor.author | Kim, Jeong-Hoon | - |
dc.contributor.author | Park, Hyun | - |
dc.date.accessioned | 2023-12-06T16:39:02Z | - |
dc.date.available | 2023-12-06T16:39:02Z | - |
dc.date.issued | 2023 | - |
dc.identifier.uri | https://repository.kopri.re.kr/handle/201206/14944 | - |
dc.description.abstract | The blackfin Icefish (Chaenocephalus aceratus) belongs to the family Channichthyidae and the suborder Notothenioidei which lives in the Antarctic. We corrected the mis-scaffolds in the previous linkage map results by Hi-C analysis to obtain improved results for chromosome-level genome assembly. The final assembly analysis resulted in a total of 3,135 scaffolds, a genome size of 1,065.72 Mb, and an N50 of 33.46 Mb. 820.24 Mb, representing 88.88% of the total genome, is anchored to 24 chromosomes. The final gene set of 38,024 genes, including AFGPs, was annotated using RNA evidence, proteins, and ab-initio predictions. The complete percentage of BUSCO analysis is 92.7%. In this study, we aim to contribute to the study of polar fishes by improving the genome sequences of the blackfin icefish with the AFGP genes belonging to the Notothenoidei. | - |
dc.language | English | - |
dc.subject.classification | Jang Bogo Station | - |
dc.title | A chromosome-level reference genome of the Antarctic blackfin icefish Chaenocephalus aceratus | - |
dc.title.alternative | Chaenocephalus aceratus의 염색체 수준 레퍼런스 게놈 | - |
dc.type | Article | - |
dc.identifier.bibliographicCitation | Lee Seung Jae, et al. 2023. "A chromosome-level reference genome of the Antarctic blackfin icefish Chaenocephalus aceratus". <em>SCIENTIFIC DATA</em>, 10(657): 1-9. | - |
dc.citation.title | SCIENTIFIC DATA | - |
dc.citation.volume | 10 | - |
dc.citation.number | 657 | - |
dc.identifier.doi | 10.1038/s41597-023-02561-w | - |
dc.citation.startPage | 1 | - |
dc.citation.endPage | 9 | - |
dc.description.articleClassification | SCIE | - |
dc.description.jcrRate | JCR 2021:16.216 | - |
dc.subject.keyword | Hi-C analysis | - |
dc.subject.keyword | AFGP genes | - |
dc.subject.keyword | BUSCO analysis | - |
dc.subject.keyword | blackfin Icefish (Chaenocephalus aceratus) | - |
dc.subject.keyword | chromosome-level reference genome | - |
dc.identifier.localId | 2023-0202 | - |
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