KOPRI Repository

Draft genome and de novo transcriptome assembly of the Antarctic marine flatworm Obrimoposthia wandeli

Cited 0 time in wos
Cited 0 time in scopus

Full metadata record

DC Field Value Language
dc.contributor.authorShin, Seung Chul-
dc.contributor.authorKim, Sanghee-
dc.date.accessioned2026-01-22T06:43:03Z-
dc.date.available2026-01-22T06:43:03Z-
dc.date.issued2025-12-
dc.identifier.urihttps://repository.kopri.re.kr/handle/201206/16501-
dc.description.abstractObjectives Obrimoposthia wandeli is the most abundant marine planarian in the intertidal zone of the maritime Antarctic region and is presumed to have adapted to the extreme conditions of the Southern Ocean. However, genomic studies on marine flatworms remain extremely limited, with only one marine planarian genome currently available in public databases. We present the first draft genome and de novo transcriptome assembly of O. wandeli from Antarctica, providing a valuable genomic resource for the study of flatworm biology and environmental adaptation under harsh environments. Data description We sequenced the genome and transcriptome of O. wandeli collected near King Sejong Station using Oxford Nanopore long-read, Illumina paired-end, and RNA sequencing. The draft genome assembly spans 1.35 Gb across 6,912 contigs, with an N50 of 343,088 bp and an estimated 48,310 predicted genes. The assembly showed Benchmarking Universal Single-Copy Orthologs (BUSCO) completeness scores of 80.2% (genome) and 80.8% (proteins). The de novo transcriptome assembly identified 26,169 non-redundant transcripts, with a BUSCO completeness of 93.1%. These genomic and transcriptomic datasets represent the first Antarctic marine planarian reference and provide a valuable resource for studying marine flatworm genomics.en_US
dc.languageEnglishen_US
dc.subject.classificationKing Sejong Stationen_US
dc.titleDraft genome and de novo transcriptome assembly of the Antarctic marine flatworm Obrimoposthia wandelien_US
dc.title.alternative남극 해양 편형동물 Obrimoposthia wandeli의 초안 유전체 및 de novo 전사체 조립en_US
dc.typeArticleen_US
dc.identifier.bibliographicCitationShin, Seung Chul, Kim, Sanghee. 2025. "Draft genome and de novo transcriptome assembly of the Antarctic marine flatworm Obrimoposthia wandeli". <em>BMC Genomic Data</em>, 27(1): 0-0.-
dc.citation.titleBMC Genomic Dataen_US
dc.citation.volume27en_US
dc.citation.number1en_US
dc.identifier.doi10.1186/s12863-025-01390-7-
dc.citation.startPage0en_US
dc.citation.endPage0en_US
dc.description.articleClassificationSCIE-
dc.description.jcrRateJCR 2023:65.969en_US
dc.subject.keywordAntarctic marine flatwormen_US
dc.subject.keywordAntarcticaen_US
dc.subject.keywordKing Sejong Stationen_US
dc.subject.keywordObrimoposthia wandelien_US
dc.identifier.localId2025-0238-
Appears in Collections  
2025-2025, 온난화로 인한 극지 서식환경 변화와 생물 적응진화 연구 (25-25) / 김상희 (PE25140)
Files in This Item
There are no files associated with this item.

Items in DSpace are protected by copyright, with all rights reserved, unless otherwise indicated.

Browse