KOPRI Repository

The complete mitochondrial genome of Arctic Calanus hyperboreus (Copepoda, Calanoida) reveals characteristic patterns in calanoid mitochondrial genome.

Cited 0 time in wos
Cited 0 time in scopus

Full metadata record

DC Field Value Language
dc.contributor.authorKim, Sanghee-
dc.contributor.authorChoi, Han-Gu-
dc.contributor.authorGi-Sik Min-
dc.contributor.authorByung-Jin Lim-
dc.coverage.spatialArctic-
dc.date.accessioned2018-03-20T13:47:24Z-
dc.date.available2018-03-20T13:47:24Z-
dc.date.issued2013-
dc.identifier.urihttps://repository.kopri.re.kr/handle/201206/6267-
dc.description.abstractCopepoda is the most diverse and abundant group of crustaceans, but its phylogenetic relationships are ambiguous. Mitochondrial (mt) genomes are useful for studying evolutionary history, but only six complete Copepoda mt genomes have been made available and these have extremely rearranged genome structures. This study determined the mt genome of Calanus hyperboreus, making it the first reported Arctic copepod mt genome and the first complete mt genome of a calanoid copepod. The mt genome of C. hyperboreus is 17,910 bp in length and it contains the entire set of 37 mt genes, including 13 protein-coding genes, 2 rRNAs, and 22 tRNAs. It has a very unusual gene structure, including the longest control region reported for a crustacean, a large tRNA gene cluster, and reversed GC skews in 11 out of 13 protein-coding genes (84.6%). Despite the unusual features, comparing this genome to published copepod genomes revealed retained pan-crustacean features, as well as a conserved calanoid-specific pattern. Our data provide a foundation for exploring the calanoid pattern and the mechanisms of mt gene rearrangement in the evolutionary history of the copepod mt genome.en made available and these have extremely rearranged genome structures. This study determined the mt genome of Calanus hyperboreus, making it the first reported Arctic copepod mt genome and the first complete mt genome of a calanoid copepod. The mt genome of C. hyperboreus is 17,910 bp in length and it contains the entire set of 37 mt genes, including 13 protein-coding genes, 2 rRNAs, and 22 tRNAs. It has a very unusual gene structure, including the longest control region reported for a crustacean, a large tRNA gene cluster, and reversed GC skews in 11 out of 13 protein-coding genes (84.6%). Despite the unusual features, comparing this genome to published copepod genomes revealed retained pan-crustacean features, as well as a conserved calanoid-specific pattern. Our data provide a foundation for exploring the calanoid pattern and the mechanisms of mt gene rearrangement in the evolutionary history of the copepod mt genome.-
dc.languageEnglish-
dc.publisherElsevier-
dc.subjectGenetics & Heredity-
dc.titleThe complete mitochondrial genome of Arctic Calanus hyperboreus (Copepoda, Calanoida) reveals characteristic patterns in calanoid mitochondrial genome.-
dc.title.alternative북극 요각류 Calanus hyperboreus의 미토콘드리아 게놈을 통해 calanoid 게놈의 특징적인 pattern을 밝힌 연구-
dc.typeArticle-
dc.identifier.bibliographicCitationKim, Sanghee, et al. 2013. "The complete mitochondrial genome of Arctic Calanus hyperboreus (Copepoda, Calanoida) reveals characteristic patterns in calanoid mitochondrial genome.". <em>Gene</em>, 520(1): 64-72.-
dc.citation.titleGene-
dc.citation.volume520-
dc.citation.number1-
dc.identifier.doihttp://dx.doi.org/10.1016/j.gene.2012.09.059-
dc.citation.startPage64-
dc.citation.endPage72-
dc.description.articleClassificationSCI-
dc.description.jcrRateJCR 2011:58.86-
dc.subject.keywordArctic-
dc.subject.keywordCalanoida-
dc.subject.keywordCalanus hyperboreus-
dc.subject.keywordCopepoda-
dc.subject.keywordMitochondria-
dc.identifier.localId2013-0234-
dc.identifier.scopusid2-s2.0-84875805656-
dc.identifier.wosid000318137900008-
Appears in Collections  
2011-2013, Studies on biodiversity and changing ecosystems in King George Islands, Antarctica (BIOCE) (11-13) / Choi, Han-Gu (PE11030, PE12030, PE13030)
Files in This Item

Items in DSpace are protected by copyright, with all rights reserved, unless otherwise indicated.

Browse