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Novel insights into the genetic diversity of Parafavella based on mitochondrial CO1 sequences

Cited 2 time in wos
Cited 2 time in scopus
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Title
Novel insights into the genetic diversity of Parafavella based on mitochondrial CO1 sequences
Other Titles
해양 규조류의 유전적 다양성 고찰
Authors
Jung, Jae-Ho
Moon, Ji Hye
Park, Kyung-Min
Kim, Sanghee
Dolan, John R.
Yang, Eun Jin
Subject
Evolutionary Biology; Zoology
Keywords
Tintinnidea; cryptic species; marine plankton; polymorphism
Issue Date
2018-11
Citation
Jung, Jae-Ho, et al. 2018. "Novel insights into the genetic diversity of Parafavella based on mitochondrial CO1 sequences". ZOOLOGICA SCRIPTA, 47(6): 743-755.
Abstract
We used both nuclear ribosomal genes (28S rDNA, 18S rDNA, 5.8S rDNA, internal transcribed spacer regions: ITS1, ITS2) and mitochondrial CO1 sequences to group or distinguish morphotypes of Parafavella, a problematic genus of tintinnid ciliates of the marine microzooplankton. We sequenced 30 single cells of Parafavella from the Bering Sea, the Greenland Sea, and the East/Japan Sea. Sequences were obtained from 4 morphotypes, typically ascribed to P. gigantea, P. greenlandica, P. jorgenseni, and P. subrotundata and from GenBank, the nuclear ribosomal genes of P. parumdentata were retrieved. Cells of the five morphotypes had identical 18S and 5.8S gene sequences. ITS1, ITS2 and 28S sequences produced two clusters: one grouping P. greenlandica and P. parumdentata and the other grouping P. jorgenseni, P. gigantea, and P. subrotundata. In contrast, CO1 nucleotide data yielded eight haplotypes clustered into five groups: one composed of P. greenlandica morphotypes, two distinct haplotypes of P. jorgenseni, and two distinct haplotypes of P. gigantea with one including P. subrotundata morphotypes. We investigated the co­occurrence of different morphotypes in samples from sites across a large gradient of latitude and concentrations of Parafavella cells. Natural communities contained 2?6 different morphotypes. We conclude that both crypticity and polymorphism characterize Parafavella, as known for other tintinnid genera.
URI
https://repository.kopri.re.kr/handle/201206/10536
DOI
http://dx.doi.org/10.1111/zsc.12312
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