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Characterization of complete mitochondrial genome and gene organization of sharp-spined notothenia, Trematomus pennellii (Perciformes: Nototheniidae)

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Cited 1 time in scopus
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Title
Characterization of complete mitochondrial genome and gene organization of sharp-spined notothenia, Trematomus pennellii (Perciformes: Nototheniidae)
Other Titles
sharp-spined notothenia의 완전한 미토콘드리아 게놈과 유전자 구조
Authors
Alam, Md. Jobaidul
Kim, Jeong-Hoon
Andriyono, Sapto
Lee, Ji-Hyun
Lee, Soo Rin
Park, Hyun
Kim, Hyun-Woo
Subject
Genetics & Heredity
Keywords
Antarctica; Next generation sequencing; Notothenioidei; Trematomus pennellii; mitochondrial genome
Issue Date
2019-01
Citation
Alam, Md. Jobaidul, et al. 2019. "Characterization of complete mitochondrial genome and gene organization of sharp-spined notothenia, Trematomus pennellii (Perciformes: Nototheniidae)". MITOCHONDRIAL DNA PART B-RESOURCES, 4(1): 648-649.
Abstract
The complete mitochondrial genome of Trematomus pennellii was determined by MiSeq platform. The mitogenome of T. pennellii was 15,976 bp in length and encoded 37 genes (13 proteins, 22 tRNAs, 2 ribosomal RNAs) and a non-coding control region (D-Loop). Overall A + T contents (54.10%) in the mitogenome was higher than G + C contents (45.90%). Twenty-nine genes were located on H strand, whereas eight genes were identified on L strand. Among 13 protein-coding genes, unusual start codons were identified in COX1 (GTG), ND6 (ATT), COX2 (ATC), and ATP6 (ATC). The incomplete stop codon (T-) was identified in six genes including COXII, COXIII, NAD2, NAD3, NAD4, and Cytb. The phylogenetic tree of complete genome indicated that Trematomus pennellii was most closely related to Trematomus bernacchii with 91.65% DNA sequence identity.
URI
https://repository.kopri.re.kr/handle/201206/10881
DOI
http://dx.doi.org/10.1080/23802359.2018.1553518
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