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Draft genome sequence of humic substance-degrading Pseudomonas sp. PAMC 29040 from Antarctic tundra soil

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Title
Draft genome sequence of humic substance-degrading Pseudomonas sp. PAMC 29040 from Antarctic tundra soil
Other Titles
천연 복합유기화합물인 부식질을 분해하는 남극 툰드라 토양 Pseudomonas sp. PAMC 29040의 유전체 분석
Authors
Kim, Dockyu
Lee, Hyoungseok
Subject
Life Sciences & Biomedicine - Other Topics
Keywords
Cold-adapted bacteria; degradative enzyme; soil humic substance
Issue Date
2019-03
Citation
Kim, Dockyu, Lee, Hyoungseok. 2019. "Draft genome sequence of humic substance-degrading Pseudomonas sp. PAMC 29040 from Antarctic tundra soil". Korean Journal of Microbiology, 55(1): 83-85.
Abstract
Pseudomonas sp. PAMC 29040 was isolated from a maritime tundra soil in Antarctica for its ability to degrade lignin and subsequently confirmed to be able to depolymerize heterogeneous humic substance (HS), a main component of soil organic matter. The draft genome sequences of PAMC 29040 were analyzed to discover the putative genes for depolymerization of polymeric HS (e.g., dye-decolorizing peroxidase) and catabolic degradation of HS-derived small aromatics (e.g., vanillate O-demethylase). The information on degradative genes will be used to finally propose the HS degradation pathway(s) of soil bacteria inhabiting cold environments.
URI
https://repository.kopri.re.kr/handle/201206/10894
DOI
http://dx.doi.org/10.7845/KJM.2019.9008
Appears in Collections  
2019-2019, Modeling responses of terrestrial organisms to environmental changes on King George Island (19-19) / Lee, Hyoungseok (PE19090)
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