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Complete genome sequencing and comparative CAZyme analysis of Rhodococcus sp. PAMC28705 and PAMC28707 provide insight into their biotechnological and phytopathogenic potential

Cited 1 time in wos
Cited 2 time in scopus
Title
Complete genome sequencing and comparative CAZyme analysis of Rhodococcus sp. PAMC28705 and PAMC28707 provide insight into their biotechnological and phytopathogenic potential
Other Titles
남극 지의류에서 분리한 미생물 2종 (Rhodococcus sp. PAMC28705 and PAMC28707) 의 유전체 분석을 통해 유용 당분해 효소 유전자 발굴과 식물 병원균이 가지는 Cutinase 효소 발견
Authors
Ghimire, Nisha
Han, So-Ra
Kim, Byeollee
Jung, Sang-Hee
Park, Hyun
Lee, Jun Hyuck
Oh, Tae-Jin
Subject
Microbiology
Keywords
Biotechnological potentialCAZymeCutinasePhytopathogenic propertyPolysaccharideRhodococcus
Issue Date
2021-05
Citation
Ghimire, Nisha, et al. 2021. "Complete genome sequencing and comparative CAZyme analysis of Rhodococcus sp. PAMC28705 and PAMC28707 provide insight into their biotechnological and phytopathogenic potential". ARCHIVES OF MICROBIOLOGY, 203(4): 1731-1742.
Abstract
Study of carbohydrate-active enzymes (CAZymes) can reveal information about the lifestyle and behavior of an organism. Rhodococcus species is well known for xenobiotic metabolism; however, their carbohydrate utilization ability has been less discussed till date. This study aimed to present the CAZyme analysis of two Rhodococcus strains, PAMC28705 and PAMC28707, isolated from lichens in Antarctica, and compare them with other Rhodococcus, Mycobacterium, and Corynebacterium strains. Genome-wide computational analysis was performed using various tools. Results showed similarities in CAZymes across all the studied genera. All three genera showed potential for significant polysaccharide utilization, including starch, cellulose, and pectin referring their biotechnological potential. Keeping in mind the pathogenic strains listed across all three genera, CAZymes associated to pathogenicity were analyzed too. Cutinase enzyme, which has been associated with phytopathogenicity, was abundant in all the studied organisms. CAZyme gene cluster of Rhodococcus sp. PAMC28705 and Rhodococcus sp. PAMC28707 showed the insertion of cutinase in the cluster, further supporting their possible phytopathogenic properties.
URI
https://repository.kopri.re.kr/handle/201206/12969
DOI
http://dx.doi.org/10.1007/s00203-020-02177-3
Type
Article
Station
King Sejong Station
Indexed
SCIE
Appears in Collections  
2020-2020, Development of potential candidates as antibiotics based on polar genetic resources (20-20) / Lee, Jun Hyuck (PM20030)
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